{ "_id": "6ac4d073f511ae58c09a1bbb", "Package": "codalm", "Type": "Package", "Title": "Transformation-Free Linear Regression for Compositional Outcomes\nand Predictors", "Version": "0.1.1", "Authors@R": "c(person(given = \"Jacob\",\nfamily = \"Fiksel\",\nrole = c(\"aut\"),\nemail = \"jfiksel@gmail.com\",\ncomment = c(ORCID = \"0000-0001-7067-1334\")),\nperson(given = \"Abhirup\",\nfamily = \"Datta\",\nrole = c(\"ctb\"),\nemail = \"abhidatta@jhu.edu\"),\nperson(given = \"Sandipan\",\nfamily = \"Pramanik\",\nrole = c(\"cre\", \"ctb\"),\nemail = \"sandy.pramanik@gmail.com\",\ncomment = c(ORCID = \"0000-0002-7196-155X\")))", "Maintainer": "Sandipan Pramanik ", "Description": "Implements the expectation-maximization (EM) algorithm as\ndescribed in Fiksel et al. (2022) \nfor transformation-free linear regression for compositional\noutcomes and predictors.", "License": "GPL-2", "biocViews": "", "Encoding": "UTF-8", "URL": "https://github.com/jfiksel/codalm", "BugReports": "https://github.com/jfiksel/codalm/issues", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Repository": "https://jfiksel.r-universe.dev", "Date/Publication": "2025-12-10 15:44:26 UTC", "RemoteUrl": "https://github.com/jfiksel/codalm", "RemoteRef": "HEAD", "RemoteSha": "66744ff0b314595b2adcd9e820479927b7ea3e28", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-06 10:35:47 UTC", "User": "root" }, "Author": "Jacob Fiksel [aut] (ORCID: ),\nAbhirup Datta [ctb],\nSandipan Pramanik [cre, ctb] (ORCID:\n)", "_user": "jfiksel", "_type": "src", "_file": "codalm_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/73d8c25dd257f6a7013d025976087034e6a81938430ffa77ddab9586e5570a3c", "_filesize": 114199, "_sha256": "73d8c25dd257f6a7013d025976087034e6a81938430ffa77ddab9586e5570a3c", "_expires": "2027-01-14T10:41:53.000Z", "_created": "2026-10-06T10:35:47.000Z", "_published": "2026-10-06T10:41:54.831Z", "_jobs": [ { "job": 112226787331, "time": 128, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11406732210" }, { "job": 112226787301, "time": 131, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11407072311" }, { "job": 112226787350, "time": 191, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11406792872" }, { "job": 112226787324, "time": 159, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11406292613" }, { "job": 112225775732, "time": 162, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11406682113" }, { "job": 112226787351, "time": 89, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11406472486" }, { "job": 112226787439, "time": 84, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11406602114" }, { "job": 112226787414, "time": 73, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11405503211" }, { "job": 112226787339, "time": 82, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11406517577" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900", "_status": "success", "_upstream": "https://github.com/jfiksel/codalm", "_commit": { "id": "66744ff0b314595b2adcd9e820479927b7ea3e28", "author": "Sandipan Pramanik ", "committer": "GitHub ", "message": "Merge pull request #5 from sandy-pramanik/fix-future-plan-comparison\n\nIncluded all.equal() instead of identical() to compare future plans", "time": 1765381466 }, "_maintainer": { "name": "Sandipan Pramanik", "email": "sandy.pramanik@gmail.com", "login": "sandy-pramanik", "orcid": "0000-0002-7196-155X", "description": "Postdoctoral Fellow, Department of Biostatistics", "uuid": 66769914 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "SQUAREM", "version": ">= 2020.3", "role": "Imports" }, { "package": "future", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "gtools", "role": "Suggests" }, { "package": "remotes", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "ggtern", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" } ], "_owner": "jfiksel", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-50", "n": 1 } ], "_tags": [], "_stars": 3, "_contributors": [ { "user": "jfiksel", "count": 26, "uuid": 6015543 }, { "user": "sandy-pramanik", "count": 3, "uuid": 66769914 }, { "user": "henrikbengtsson", "count": 1, "uuid": 1616850 } ], "_userbio": { "uuid": 6015543, "type": "user", "name": "Jacob Fiksel", "followers": 38, "description": "Current postdoc in Biostatistics at UPenn, former PhD student at JHSPH Biostatistics " }, "_downloads": { "count": 405, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/codalm" }, "_mentions": 1, "_devurl": "https://github.com/jfiksel/codalm", "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/codalm.html", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/jfiksel/codalm", "_realowner": "jfiksel", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2020-06-25" }, { "version": "0.1.1", "date": "2021-06-21" }, { "version": "0.1.2", "date": "2021-07-26" }, { "version": "0.1.3", "date": "2025-12-11" } ], "_exports": [ "codalm", "codalm_ci", "codalm_indep_test" ], "_help": [ { "page": "codalm", "title": "Transformation-free Linear Regression for Compositional Outcomes and Predictors", "topics": [ "codalm" ] }, { "page": "codalm_ci", "title": "Bootstrap Confidence Intervals Linear Regression for Compositional Outcomes and Predictors", "topics": [ "codalm_ci" ] }, { "page": "codalm_indep_test", "title": "Permutation Test for Linear Independence Between Compositional Outcomes and Predictors", "topics": [ "codalm_indep_test" ] } ], "_readme": "https://github.com/jfiksel/codalm/raw/HEAD/README.md", "_rundeps": [ "codetools", "digest", "future", "future.apply", "globals", "listenv", "parallelly", "SQUAREM" ], "_vignettes": [ { "source": "codalm_quickstart.Rmd", "filename": "codalm_quickstart.html", "title": "How to use codalm", "engine": "knitr::rmarkdown", "headings": [], "created": "2020-06-01 19:48:57", "modified": "2025-12-10 15:44:26", "commits": 6 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "codalm", "_universes": [ "jfiksel", "sandy-pramanik" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-10-06T10:37:47.000Z", "distro": "resolute", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/9ab634c16c4151e5ae3a4da92127c9ba9bee9d23efbb544c2f62d368fc8c9b1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-10-06T10:37:56.000Z", "distro": "resolute", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/964a93b34d9cf6573bce1374a55cdc4c7b90efbf9091af675992d64071ce673b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-10-06T10:40:36.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/57a229e5737a54cb2677044a2742f65295ec8ca7822483ea22007b5ea18feb31", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-10-06T10:38:12.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/da10e42067b3a44c3eeeb9da23026ba8d401aa5582f062e02e61e74f3e6cb1b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-10-06T10:37:33.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/eb6bc9fc6b17692625ed0851fdb0ad81bf321548404a1b831d12561647ba3273", "status": "success", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-10-06T10:36:58.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/6d073cb989312dd0112b0e8c082eaa9810591a50d0d2969e60a45be36eb0177a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-10-06T10:36:54.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/caffade0dc6efdea3a719f996562bb6eeeb99511a18b887117c4375077c6da76", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" }, { "r": "4.6.1", "os": "win", "version": "0.1.1", "date": "2026-10-06T10:37:04.000Z", "commit": "66744ff0b314595b2adcd9e820479927b7ea3e28", "fileid": "https://r2.ropensci.org/336c45fcaa668f0ff83d0655aa93228ee1df1078259ee7df826f6ac8413f29c9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfiksel/actions/runs/37450511900" } ] }